GrapevineDiseaseV1, Main, Exploration, bibRecord, 000186

Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.

Identifieur interne : 000186 ( Main/Exploration ); précédent : 000185; suivant : 000187

Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.

Auteurs : Surya Sapkota [États-Unis] ; Li-Ling Chen [États-Unis] ; Shanshan Yang [États-Unis] ; Katie E. Hyma [États-Unis] ; Lance Cadle-Davidson [États-Unis] ; Chin-Feng Hwang [États-Unis]

Source :

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2019.

RBID : pubmed:30341491

Descripteurs français

KwdFr :
- Cartographie chromosomique (MeSH), Chromosomes de plante (génétique), Génotype (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Oomycetes (pathogénicité), Phénotype (MeSH), Polymorphisme de nucléotide simple (MeSH), Répétitions microsatellites (MeSH), Résistance à la maladie (génétique), Vitis (génétique), Vitis (microbiologie).
MESH :
- génétique : Chromosomes de plante, Maladies des plantes, Résistance à la maladie, Vitis.
- microbiologie : Maladies des plantes, Vitis.
- pathogénicité : Oomycetes.
- Cartographie chromosomique, Génotype, Liaison génétique, Locus de caractère quantitatif, Phénotype, Polymorphisme de nucléotide simple, Répétitions microsatellites.

English descriptors

KwdEn :
- Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), Disease Resistance (genetics), Genetic Linkage (MeSH), Genotype (MeSH), Microsatellite Repeats (MeSH), Oomycetes (pathogenicity), Phenotype (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Polymorphism, Single Nucleotide (MeSH), Quantitative Trait Loci (MeSH), Vitis (genetics), Vitis (microbiology).
MESH :
- genetics : Chromosomes, Plant, Disease Resistance, Plant Diseases, Vitis.
- microbiology : Plant Diseases, Vitis.
- pathogenicity : Oomycetes.
- Chromosome Mapping, Genetic Linkage, Genotype, Microsatellite Repeats, Phenotype, Polymorphism, Single Nucleotide, Quantitative Trait Loci.

Abstract

KEY MESSAGE

A major QTL for downy mildew resistance was detected on chromosome 18 (Rpv27) in Vitis aestivalis-derived 'Norton' based on a high-resolution linkage map with SNP and SSR markers as well as 2 years of field and laboratory phenotyping data. Grapevine downy mildew caused by the oomycete Plasmopara viticola is one of the most widespread and destructive diseases, particularly in humid viticultural areas where it damages green tissues and defoliates vines. Traditional Vitis vinifera wine grape cultivars are susceptible to downy mildew whereas several North American and a few Asian cultivars possess various levels of resistance to this disease. To identify genetic determinants of downy mildew resistance in V. aestivalis-derived 'Norton,' a mapping population with 182 genotypes was developed from a cross between 'Norton' and V. vinifera 'Cabernet Sauvignon' from which a consensus map was constructed via 411 simple sequence repeat (SSR) markers. Using genotyping-by-sequencing, 3825 single nucleotide polymorphism (SNP) markers were also generated. Of these, 1665 SNP and 407 SSR markers were clustered into 19 linkage groups in 159 genotypes, spanning a genetic distance of 2203.5 cM. Disease progression in response to P. viticola was studied in this population for 2 years under both laboratory and field conditions, and strong correlations were observed among data sets (Spearman correlation coefficient = 0.57-0.79). A quantitative trait loci (QTL) analysis indicated a resistance locus on chromosome 18, here named Rpv27, explaining 33.8% of the total phenotypic variation. Flanking markers closely linked with the trait can be further used for marker-assisted selection in the development of new cultivars with resistance to downy mildew.

DOI: 10.1007/s00122-018-3203-6
PubMed: 30341491

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000226
to stream Main, to step Curation: 000226

Le document en format XML

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<author><name sortKey="Yang, Shanshan" sort="Yang, Shanshan" uniqKey="Yang S" first="Shanshan" last="Yang">Shanshan Yang</name>
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<author><name sortKey="Hwang, Chin Feng" sort="Hwang, Chin Feng" uniqKey="Hwang C" first="Chin-Feng" last="Hwang">Chin-Feng Hwang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA. ChinFengHwang@MissouriState.edu.</nlm:affiliation>
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<series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title>
<idno type="eISSN">1432-2242</idno>
<imprint><date when="2019" type="published">2019</date>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Disease Resistance (genetics)</term>
<term>Genetic Linkage (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Microsatellite Repeats (MeSH)</term>
<term>Oomycetes (pathogenicity)</term>
<term>Phenotype (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Quantitative Trait Loci (MeSH)</term>
<term>Vitis (genetics)</term>
<term>Vitis (microbiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Génotype (MeSH)</term>
<term>Liaison génétique (MeSH)</term>
<term>Locus de caractère quantitatif (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Oomycetes (pathogénicité)</term>
<term>Phénotype (MeSH)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Répétitions microsatellites (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Vitis (génétique)</term>
<term>Vitis (microbiologie)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term>
<term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term>
<term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Vitis</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Oomycetes</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Oomycetes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term>
<term>Genetic Linkage</term>
<term>Genotype</term>
<term>Microsatellite Repeats</term>
<term>Phenotype</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Quantitative Trait Loci</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term>
<term>Génotype</term>
<term>Liaison génétique</term>
<term>Locus de caractère quantitatif</term>
<term>Phénotype</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Répétitions microsatellites</term>
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<front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b>
</p>
<p>A major QTL for downy mildew resistance was detected on chromosome 18 (Rpv27) in Vitis aestivalis-derived 'Norton' based on a high-resolution linkage map with SNP and SSR markers as well as 2 years of field and laboratory phenotyping data. Grapevine downy mildew caused by the oomycete Plasmopara viticola is one of the most widespread and destructive diseases, particularly in humid viticultural areas where it damages green tissues and defoliates vines. Traditional Vitis vinifera wine grape cultivars are susceptible to downy mildew whereas several North American and a few Asian cultivars possess various levels of resistance to this disease. To identify genetic determinants of downy mildew resistance in V. aestivalis-derived 'Norton,' a mapping population with 182 genotypes was developed from a cross between 'Norton' and V. vinifera 'Cabernet Sauvignon' from which a consensus map was constructed via 411 simple sequence repeat (SSR) markers. Using genotyping-by-sequencing, 3825 single nucleotide polymorphism (SNP) markers were also generated. Of these, 1665 SNP and 407 SSR markers were clustered into 19 linkage groups in 159 genotypes, spanning a genetic distance of 2203.5 cM. Disease progression in response to P. viticola was studied in this population for 2 years under both laboratory and field conditions, and strong correlations were observed among data sets (Spearman correlation coefficient = 0.57-0.79). A quantitative trait loci (QTL) analysis indicated a resistance locus on chromosome 18, here named Rpv27, explaining 33.8% of the total phenotypic variation. Flanking markers closely linked with the trait can be further used for marker-assisted selection in the development of new cultivars with resistance to downy mildew.</p>
</div>
</front>
</TEI>
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<DateCompleted><Year>2019</Year>
<Month>04</Month>
<Day>18</Day>
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<DateRevised><Year>2020</Year>
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<Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title>
<ISOAbbreviation>Theor Appl Genet</ISOAbbreviation>
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<ArticleTitle>Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.</ArticleTitle>
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<Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="UNASSIGNED">A major QTL for downy mildew resistance was detected on chromosome 18 (Rpv27) in Vitis aestivalis-derived 'Norton' based on a high-resolution linkage map with SNP and SSR markers as well as 2 years of field and laboratory phenotyping data. Grapevine downy mildew caused by the oomycete Plasmopara viticola is one of the most widespread and destructive diseases, particularly in humid viticultural areas where it damages green tissues and defoliates vines. Traditional Vitis vinifera wine grape cultivars are susceptible to downy mildew whereas several North American and a few Asian cultivars possess various levels of resistance to this disease. To identify genetic determinants of downy mildew resistance in V. aestivalis-derived 'Norton,' a mapping population with 182 genotypes was developed from a cross between 'Norton' and V. vinifera 'Cabernet Sauvignon' from which a consensus map was constructed via 411 simple sequence repeat (SSR) markers. Using genotyping-by-sequencing, 3825 single nucleotide polymorphism (SNP) markers were also generated. Of these, 1665 SNP and 407 SSR markers were clustered into 19 linkage groups in 159 genotypes, spanning a genetic distance of 2203.5 cM. Disease progression in response to P. viticola was studied in this population for 2 years under both laboratory and field conditions, and strong correlations were observed among data sets (Spearman correlation coefficient = 0.57-0.79). A quantitative trait loci (QTL) analysis indicated a resistance locus on chromosome 18, here named Rpv27, explaining 33.8% of the total phenotypic variation. Flanking markers closely linked with the trait can be further used for marker-assisted selection in the development of new cultivars with resistance to downy mildew.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sapkota</LastName>
<ForeName>Surya</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>State Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Plant Pathology and Plant Microbe Biology Section, School of Integrative Plant Science, NYS Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Li-Ling</ForeName>
<Initials>LL</Initials>
<AffiliationInfo><Affiliation>State Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Shanshan</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Bioinformatics Core Facility, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287-5001, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hyma</LastName>
<ForeName>Katie E</ForeName>
<Initials>KE</Initials>
<AffiliationInfo><Affiliation>Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, 14853, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cadle-Davidson</LastName>
<ForeName>Lance</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>USDA-ARS Grape Genetics Research Unit, Geneva, NY, 14456, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hwang</LastName>
<ForeName>Chin-Feng</ForeName>
<Initials>CF</Initials>
<AffiliationInfo><Affiliation>State Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA. ChinFengHwang@MissouriState.edu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>Agriculture</GrantID>
<Agency>U.S. Department of Agriculture</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>Food Research Initiative (2013-67014-21360)</GrantID>
<Agency>U.S. Department of Agriculture</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>10</Month>
<Day>19</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Theor Appl Genet</MedlineTA>
<NlmUniqueID>0145600</NlmUniqueID>
<ISSNLinking>0040-5752</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008040" MajorTopicYN="Y">Genetic Linkage</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
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	Serveur d'exploration sur les maladies des plantes grimpantes
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Serveur d'exploration sur les maladies des plantes grimpantes

Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.

Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.

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